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10.6: R, DNA and evolution

  • Page ID
    3615
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    In biology, majority of research is now related with DNA-based phylogenetic studies. R is aware of these methods, and one of examples (morphological though) was presented above. DNA phylogeny research includes numerous steps, and the scripting power of R could be used to automate procedures by joining them in a sort of workflow which we call Ripeline.

    Book supplements contain archived folder ripeline.zip which includes R scripts and data illustrating work with DNA tabular database, FASTA operations, DNA alignment, flank removal, gapcoding, concatenation, and examples of how to use internal and external tree estimators.


    This page titled 10.6: R, DNA and evolution is shared under a Public Domain license and was authored, remixed, and/or curated by Alexey Shipunov via source content that was edited to the style and standards of the LibreTexts platform; a detailed edit history is available upon request.