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17: Hypothesis testing in R

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    7656
  • 17 Hypothesis testing in R

    In this chapter we will present several examples of using R to perform hypothesis testing.

    17.1 Simple example: Coin-flipping (Section 16.3.5.1)

    Let’s say that we flipped 100 coins and observed 70 heads. We would like to use these data to test the hypothesis that the true probability is 0.5.

    First let’s generate our data, simulating 100,000 sets of 100 flips. We use such a large number because it turns out that it’s very rare to get 70 heads, so we need many attempts in order to get a reliable estimate of these probabilties. This will take a couple of minutes to complete.

    ## [1] 3e-05

    For comparison, we can also compute the p-value for 70 or more heads based on a null hypothesis of Pheads=0.5P_{heads}=0.5, using the binomial distribution.

    ## [1] 3.9e-05

    17.2 Simulating p-values

    In this exercise we will perform hypothesis testing many times in order to test whether the p-values provided by our statistical test are valid. We will sample data from a normal distribution with a mean of zero, and for each sample perform a t-test to determine whether the mean is different from zero. We will then count how often we reject the null hypothesis; since we know that the true mean is zero, these are by definition Type I errors.

    ## [1] 0.048

    We should see that the proportion of samples with p<.05p < .05 is about 5%.